rs253354595 SNP Detail

Summary

• ID
  rs253354595
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135934658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATTGGGCC AGGATGAAGG CCCAGGTCAG
  GGAAGCCGAT TTGCAACAGC CTCAAAGAAC TATCAAGGct gcctctaggc tgcctggact
  tgggcaaatt acctccccat ctctgggcct cagtttccct attgagtgag caattggctc
  R
  aatattttcc aaactccTGC TAGAATCATT AGAGCCGCAG AGATCCTTAT GGACATCGCT
  AATTAGTCCC TGCAAATAAG CAGGCTCACT CCACTTCCCC AACCAGCTAC CAGTGTCTGT
  CCAAGCAATA GTTCGGTTTC CTTCTGGTTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319994321	CHEV_1_137903497	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253354595					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135934658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi801	CpG island 801	508 bp proximal
Igfn1	immunoglobulin-like and fibronectin type III domain containing 1	578 bp upstream
Rr28609	regulatory region 28609	342 bp proximal
Rr372097	regulatory region 372097	1577 bp upstream
Tmem9	transmembrane protein 9	1299 bp upstream