rs253360174 SNP Detail

Summary

• ID
  rs253360174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTACACTGT AGCTGTCTTC AGACACTCCA GGAGAGGTTA
  TCAGATCTTA TTACAGATGG TTGTGGGCCA CCATATGGTT GCTAGGAATT AACTCAGGAC
  Y
  TCTGGAAGGG CAGTCAGTGC TCTTAACTGC TGAGCCACCT CTCCAGCCCT TATCTTTAAT
  TTCTAATAAC TAATGATATT GCATATATTT CCCCTTACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588884	CHEV_2_158209378	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253360174					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225562 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1468 bp downstream
Tssr21319	transcription start site region 21319	1054 bp downstream
Tssr21320	transcription start site region 21320	1018 bp downstream
Tssr21321	transcription start site region 21321	908 bp downstream
Tssr21322	transcription start site region 21322	785 bp downstream
Tssr21323	transcription start site region 21323	741 bp downstream
Tssr21324	transcription start site region 21324	703 bp downstream
Tssr21325	transcription start site region 21325	667 bp downstream
Tssr21326	transcription start site region 21326	643 bp downstream
Tssr21327	transcription start site region 21327	606 bp downstream
Tssr21328	transcription start site region 21328	560 bp downstream
Tssr21329	transcription start site region 21329	547 bp downstream
Tssr21330	transcription start site region 21330	458 bp downstream
Tssr21331	transcription start site region 21331	39 bp upstream
Tssr21332	transcription start site region 21332	176 bp upstream
Tssr21333	transcription start site region 21333	208 bp upstream
Tssr21334	transcription start site region 21334	975 bp upstream
Tssr21335	transcription start site region 21335	1331 bp upstream
Tssr21336	transcription start site region 21336	1385 bp upstream
Tssr21337	transcription start site region 21337	1489 bp upstream
Tssr27228	transcription start site region 27228	424 bp upstream