rs253363446 SNP Detail

Summary

• ID
  rs253363446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109677939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGACAG GGCTCTGGTT
  CTTGCATCAG CAATGACCTC ACGGTACCTG AAGAGGGATC AAGCAAACTG CATGTGTATT
  ATTAACACCA TTTGTAACCT GGCCTACTCT TTTCAATATC AACTTCAGCT TTGAAGGTTT
  CCAAAGAGGC CCCATTAACC TTGGGGGTGG GGGGGCAAGG CAGAAGGACA AATGCCTTGG
  R
  GTAGAGGTTG TCCATGCTTC TTGCTTTACT TACAGCGCAT GTTAATTTGG TCCACCTTCC
  CATAATAGTG AATGCGCCTT GGGGGCTTCC TGTGAACAAT ATTTCCTTAA AGGCACAGTG
  CTAGTTACGG GGTCTTCTCT TCGCGTCCTT GCAAACTTCT CTTTGCTATA TTCTCTGCAT
  CTGCAGCAGG CAATGCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387317467	MGP_WTSI_12_110949715	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	A	A	A	A	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253363446					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	G	A	A	A	A	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387317467	MGP_WTSI_12_110949715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109677939 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	274 bp downstream
Mir299a	microRNA 299a	805 bp downstream
Mir299b	microRNA 299b	812 bp upstream
Mir323	microRNA 323	1003 bp upstream
Mir329	microRNA 329	1976 bp upstream
Mir380	microRNA 380	298 bp upstream
Mir411	microRNA 411	1249 bp downstream
Mir758	microRNA 758	1305 bp upstream
Mir1197	microRNA 1197	812 bp upstream
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	812 bp proximal
Rr262534	regulatory region 262534	460 bp proximal
Tssr115175	transcription start site region 115175	1895 bp downstream