rs253367009 SNP Detail

Summary

• ID
  rs253367009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACATTTT AATTTACTTG
  TAATTCATTC TTTATACTCC ATATTCCATT CCCAGCTCAC CCTATCCACC CTGCAAATGC
  TCCTCCACCT CCCACACCTC CTCCCCACCC CATTCTGTCT CCACTTGAAT GCCCCCATCC
  CCCAGCACAC CTGACCTCTA AACTCCCTGG AGCCTCCAGT CTCTTGAGGG TTAGGTGCAT
  Y
  ATCTCTGAAT GAACACAGAC CTGGAAGTCC TCTAGTGGAT ATGTGTTGGG GGCCTCATAT
  CAGATAGTGT ATGCTGCATG TTTGGTGGTC CAGTGTTTGA AAGATCTTGG GGTCCAGATT
  AATTGAGACT GCTGGTCCTC CTACAGGATC ACCCTTCTCC TCAGGTTCTT TCAGCCTTCC
  TAATTCAACA ACAGGGATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321014845	CHEV_3_147936035	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253367009					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978707 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	892 bp upstream
Rr587183	regulatory region 587183	605 bp distal
Rr587184	regulatory region 587184	303 bp distal