rs253367381 SNP Detail

Summary

• ID
  rs253367381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74859193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCGACG CCCTCTTCTG
  GCTTTTAGAT GAACTGCATG CATGTAGTAC ACAGATAAAC ACACAACTAC CCATACATAT
  AAGTACCGTT ATTTTATTTT TAGGGTCTTG TGCATGCTAG GCAAGCACTT TACCACTGAT
  CAGTAGTCCA AGCCTCACAC ATACATGAAA AATAAAATCT TTACATTATC ATCATCATCA
  W
  CAACAACAAT AAATAAAATT GCCAATCTTG TGCTTTACAA AAACTGTGGG TTAAAAAAAT
  AACCCTCTAA AAATGTAGAA ACGGAAAACT ATAGAGAGAG TCGACCACAG ATGATCTTAG
  TCCTTCCTGT TGTGATTCTC ATATGCAAAA AGAAAAAAAA AAGGTTCTTA AAAAAGCATG
  TTTTTTTCCC AATGAAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378076148	MGP_WTSI_9_74799718	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253367381					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378076148	MGP_WTSI_9_74799718	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74859193 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	969 bp upstream
Cpgi22037	CpG island 22037	573 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	939 bp distal
Gm68252	predicted gene, 68252	within coordinates
Rr401515	regulatory region 401515	within coordinates
Rr401516	regulatory region 401516	818 bp upstream
Rr683033	regulatory region 683033	89 bp distal
Rr683034	regulatory region 683034	175 bp distal
Rr683035	regulatory region 683035	174 bp proximal
Rr683036	regulatory region 683036	896 bp proximal
Rr683037	regulatory region 683037	1187 bp proximal
Tssr86114	transcription start site region 86114	941 bp upstream
Tssr86115	transcription start site region 86115	1163 bp upstream
Tssr86116	transcription start site region 86116	1245 bp upstream
Tssr86117	transcription start site region 86117	1650 bp upstream