rs253374819 SNP Detail

Summary

• ID
  rs253374819
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103224739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCTTGG CTTGCTGCTA
  ATAGAATTGA CAGTCTGCCA TTCTCTAGTC TTTCAGTTTA GTTCCATTTC TATATTGGAT
  GCCTGTAAAC TTTTTAGCAT GAAATTTAAG TATGACAGGT TTATGAAAAT CTGGGTAGCT
  ATAGATGTTT TACAAGTTCT TTAAAATATT GGGCTATAAA GAAAGCAGGG GGCTAGAGAG
  W
  TGGCTCAGAG ACAAGAGAAC TGGCTGCCAT TGAAATCAGA CTCAGTTCCT ACCTAACAGT
  AACAGACCTA CCGTGTGTAC CTGTGTTCGT GTGTACCTGT GTTCGTGTGT GTGCTCGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTCGT GTATAGAGGT GTCTGTGGAG
  TTCAAAAAAA AAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323160937	CHEV_9_103249870	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253374819					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103224739 () rs orientation: forward

Symbol	Name	Function Class
Rr198506	regulatory region 198506	1739 bp distal
Rr202394	regulatory region 202394	1405 bp proximal
Rr207098	regulatory region 207098	within coordinates
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	180 bp downstream