rs253376445 SNP Detail

Summary

• ID
  rs253376445
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121422204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGTCT ACTTCCTTTG
  ATTGCTTAAA GCGAAAGTTA CCGAGGATAA AACAGGTCTG GTGACATGGT GTAGGGACAA
  AAGTTCCAGG ATTTCCCAAC TCTCCCTCTA TGTCACCCAT TTACTCCGTA GATAGCAGAG
  GTCCCGGAAT GGGAAAGGTC GGGTTTTGAC AGTTCTCGGG GGAGAATCCG TCTTGGGACG
  M
  CTGACAGAAA ACACCAGGGG AATGGATCCG GGAAATAAAT CCAGCAGGTC GGGGAGGAAC
  GAGAAGACAG GGGGGTTTGC ATTTCGCTGT GTACATTAAA AACGTCTGGT GCCGGTATCC
  TCGGGTGAGT CAACCCTCGG GAACGCCAGT CCGTCTAAAA ACTGCCGGCG GCGGCAGCTG
  GACCAAGGGT GGGAGCGGCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382025222	MGP_WTSI_10_121023355	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253376445					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382025222	MGP_WTSI_10_121023355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121422204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	within coordinates
Rr402304	regulatory region 402304	126 bp downstream
Rr402305	regulatory region 402305	427 bp upstream
Tbk1	TANK-binding kinase 1	within coordinates
Tssr96043	transcription start site region 96043	57 bp downstream
Tssr96044	transcription start site region 96044	36 bp downstream
Tssr99623	transcription start site region 99623	416 bp upstream
Tssr99624	transcription start site region 99624	389 bp upstream
Tssr99625	transcription start site region 99625	329 bp upstream
Tssr99626	transcription start site region 99626	411 bp downstream
Tssr99627	transcription start site region 99627	431 bp downstream
Tssr99628	transcription start site region 99628	514 bp downstream
Tssr99629	transcription start site region 99629	542 bp downstream
Tssr99630	transcription start site region 99630	570 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1081 bp downstream