rs253376789 SNP Detail

Summary

• ID
  rs253376789
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51303115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TGGATGCTGC CTCCGATGCC
  Y
  CAAGGAGTGG GGCAAAGTAC AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762646	CHEV_3_51199616	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253376789					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51303115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	643 bp proximal
Mgarp	mitochondria localized glutamic acid rich protein	within coordinates
Rr576308	regulatory region 576308	822 bp proximal
Tssr33205	transcription start site region 33205	793 bp upstream
Tssr33206	transcription start site region 33206	809 bp downstream
Tssr33207	transcription start site region 33207	834 bp downstream
Tssr33208	transcription start site region 33208	1022 bp downstream