rs253383044 SNP Detail

Summary

• ID
  rs253383044
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124609037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCTCGC GCTGTATTTG
  GCCTCGGAGC TTCTCTGCGC CCCATCCTCA CCCTCCTCCT AAGCTGGCTC GGCACTCTGG
  CCTCGTTAAC GTCCTCCGAG GGCCCCTCAA TCTTCCTGCT TCAGCCCCTG GGACCTAAAC
  CAATAAGCGC ATCACCCCTC GGGTGCTCTT TCCAACTGCT AAACTCAAAG TAACAACGTA
  W
  GTGTTACCGT TTGCCTTTCT GCAGCTTCGG GACCAGATCA ATTCCGATCA CCGCACTCGG
  GCCATGCAAG ATGTGAGTGC GCCGCCGTCC GCTTCCCCTG GGGTCGGGCT GGGCGGGAAA
  AGTGCAGGCT GGGAAGGTTG AGTGGCCCTG CGTGATTTCT ACCCCTGAGT TCTTAGACAA
  GCCCCTCTAG GGTACCTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294524	CHEV_4_124392488	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253383044					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124609037 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14778	CpG island 14778			within coordinates
Rr367691	regulatory region 367691			388 bp downstream
Rr599341	regulatory region 599341			1042 bp distal
Rr599342	regulatory region 599342			458 bp distal
Rr599343	regulatory region 599343			767 bp distal
Sf3a3	splicing factor 3a, subunit 3			Intron
				Noncoding-Transcript-Variant
Tssr38902	transcription start site region 38902			365 bp downstream