rs253384273 SNP Detail

Summary

• ID
  rs253384273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79895753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGGTTA CAAAAGTATT
  TATGGTTGTG GGTACCACAT CAAGTTATGG GTGTAGGGGT GAGAGGACAA TGTATTGTTT
  TCTTCTTCCA CCATGTGGGT TCTGGAGGTC GAACTCATGT CCCCCTGACT TGTCAGCTAT
  CATTTTGGTC CGCTGAGCCA CCTTGCTGGC CTTATTCTGT AATTTGCTAA TGGAGCTAGT
  S
  AATGAAACAT TGGAAGGCAT GTGTTCTTAT CGCAGCTGTC CCTGTTAAGG GCAGGAATTT
  TTTTATAGCA TCATTTCTAA ATGTGGAAGA ACCACAAGCA GCTATTTTGT CCCAAACATA
  AACATATTTG GGTTGGCCAT AGGATTCCAG GAAAAGTGGA GCAGAAAAGG TGGAACCCGC
  CCCAATATGG GAGGACTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372041283	MGP_WTSI_7_87390891	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253384273					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372041283	MGP_WTSI_7_87390891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79895753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19326	CpG island 19326	109 bp proximal
Gm73873	predicted gene, 73873	within coordinates
Rr165873	regulatory region 165873	757 bp distal
Rr168083	regulatory region 168083	within coordinates
Rr400401	regulatory region 400401	190 bp upstream
Tssr2310	transcription start site region 2310	354 bp upstream
Tssr67422	transcription start site region 67422	364 bp upstream
Tssr67423	transcription start site region 67423	370 bp upstream
Tssr67424	transcription start site region 67424	425 bp upstream
Tssr67425	transcription start site region 67425	442 bp upstream
Tssr67426	transcription start site region 67426	501 bp upstream
Tssr67427	transcription start site region 67427	524 bp upstream
Ttll13	tubulin tyrosine ligase-like family, member 13	371 bp upstream