rs253391560 SNP Detail

Summary

• ID
  rs253391560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34692962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTTAAGA CCCTGAGAGG TGGAAGCCGG
  TGGGCGGGAT CGATGCGACC ATAATGGGAG AGAATGACAA GTCGCCTCAG CTTCACCACT
  CCCCTAAATT GCTTCTTAGG AGTGGTAGTT TTCTTCTGAT AATTTGGATG TGGATCCCGT
  Y
  TCTTAGCACG TTGCTGAGCT ATTTAAGTGA ACAAGCAGTT GCTTATCAAT AAGTTCAAAT
  GTTTTTATGA CCTCTGAGCT GTTCCCCTGT AACTCAAAGT GTCGTTTTCT TGGTTTTCCA
  AAGTAGGTCT TACTCAGTTC AATAGGACCG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320226225	CHEV_2_34658470	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253391560					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34692962 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	149 bp upstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	within coordinates
Cpgi11558	CpG island 11558	260 bp distal
Fbxw2	F-box and WD-40 domain protein 2	1564 bp downstream
Gm57450	predicted gene, 57450	within coordinates
Rr373029	regulatory region 373029	within coordinates
Rr555528	regulatory region 555528	1727 bp distal
Rr555529	regulatory region 555529	1202 bp distal
Rr555530	regulatory region 555530	601 bp distal
Rr555531	regulatory region 555531	within coordinates
Rr555532	regulatory region 555532	419 bp distal
Rr555533	regulatory region 555533	1478 bp proximal
Tssr17430	transcription start site region 17430	559 bp downstream