rs253394011 SNP Detail

Summary

• ID
  rs253394011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70706009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTGTTC TTGCTGTTGT
  CTGGATCAGG AGGGCGGGGA GGGTGGACTC CCTGAGACAA GACAAGCAGG TAGAGACAGA
  TTAGAGGGAG GGATTGTCAT AGTAACATTT TCCGAGGTGA CAGAGATGAT ACACAGGCAG
  CTGGACTTCT GTGAAGGACA GAGGAGCTGG CAGACCCACA GGGCCACACC TCTGAGGGAC
  Y
  GGTGAATGGC TGGCTACCAG AGACAGTGCT GGTAGACAGT CAGGTACCTC ATGGGATGGG
  CCAAGAGATC TGGGATCCTG GGAACTATGT AGAGAAGAGG ATTTGACACC CCCCACCCAC
  CCACCCAAGG CCCTTCCCCT CTGCTGACAG CATTGTTGTG GTCGTGGCCT GCTGCCTTGT
  CTTCTGTCCC TGGGTGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391466514	MGP_WTSI_14_70868376	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253394011					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391466514	MGP_WTSI_14_70868376	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70706009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	1284 bp distal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1009 bp distal
Rr290303	regulatory region 290303	1392 bp proximal
Rr404191	regulatory region 404191	1746 bp upstream
Tssr4470	transcription start site region 4470	1948 bp downstream
Tssr126425	transcription start site region 126425	1972 bp downstream
Tssr126426	transcription start site region 126426	1836 bp downstream
Tssr126427	transcription start site region 126427	1721 bp downstream
Tssr126428	transcription start site region 126428	1709 bp downstream
Tssr126429	transcription start site region 126429	950 bp downstream
Tssr126430	transcription start site region 126430	882 bp downstream
Tssr126431	transcription start site region 126431	724 bp downstream
Tssr126432	transcription start site region 126432	686 bp downstream