rs253394805 SNP Detail

Summary

• ID
  rs253394805
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126627180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGGCTG GCGGCCAAGC
  TCAAGAGATT CGCCTGTAAA GAAGAGGAAC GTGCGTTAGC ATAGCAGCCT AAGGTGGGCT
  GCGGTGGGGG AACACCATGC AGAAAGGGCA AAGGTGGCCT TACCTTCAGG AAAGACTCCA
  CCTGCTTCCC AGAGATGCCT TCCACCTGTT CCAAGTCCTC CACCTAGTGG GACAGCAACA
  M
  TAGGAAGGGA GTGGACACAG CACGGGGACC CCCCCACTGC ACCTGTCCCC AGGGTTGTTA
  CCTCACTGAA GGGGCCGTGG AGCTCCCTCC AGCCCACGAT GAGCTGGGCT TTCTTCTGGC
  CAATGCGCTG CAGGCTGCGC AGTTCCCGAG CTGAGCCTTC ATTCAGCAGA TCCAATAATT
  TTTTGCGCCC ATGTGCCAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079251	MGP_WTSI_7_134171522	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253394805					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079251	MGP_WTSI_7_134171522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126627180 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	within coordinates
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	1003 bp upstream
Rr370584	regulatory region 370584	286 bp downstream
Rr381451	regulatory region 381451	1515 bp upstream
Rr655675	regulatory region 655675	494 bp distal
Rr655676	regulatory region 655676	6 bp distal
Tssr74912	transcription start site region 74912	1865 bp upstream
Tssr74913	transcription start site region 74913	1762 bp upstream
Tssr74914	transcription start site region 74914	1727 bp upstream
Tssr74915	transcription start site region 74915	1698 bp upstream
Tssr74916	transcription start site region 74916	1664 bp upstream
Tssr74917	transcription start site region 74917	1583 bp upstream
Tssr74918	transcription start site region 74918	1534 bp upstream
Tssr74919	transcription start site region 74919	1512 bp upstream
Tssr74920	transcription start site region 74920	1467 bp upstream
Tssr74921	transcription start site region 74921	1400 bp upstream
Tssr74922	transcription start site region 74922	1370 bp upstream
Tssr74923	transcription start site region 74923	1228 bp upstream
Tssr74924	transcription start site region 74924	1181 bp upstream
Tssr74925	transcription start site region 74925	983 bp upstream
Tssr74926	transcription start site region 74926	953 bp upstream
Tssr74927	transcription start site region 74927	811 bp upstream
Tssr74928	transcription start site region 74928	112 bp downstream