rs253394909 SNP Detail

Summary

• ID
  rs253394909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30222375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGAGAGA AGATTTGAGG
  GTAGCATGAG AATGAGGAAT GCTGTATATG TTTATTCATT CCTCCCCCCC CCCCCAGTCT
  TGGTATGTCT ATGGAGTCCT GGCTATTTTG GAGCTCATGA TGTAGAGCAC GTTGTCCTCA
  AATTCACAAA AACCTGCCAG CCTCTGCCTC AGGATGGCTG TGACTAAAGG CACGTACCAT
  Y
  ATGCCCACCC AGCTCCTATG CACTTTTGAC AGTTGTTCTA TTGAAGGCGC GTGAATGTTC
  ACAAAATCAG AATTAAACAC TGTGGCGTTA AAGTTTTGTG ATCATTGTCT TCCCTCAGTT
  GTACTGTTGC AAGGATTCTA AACTCAGTGT AATTCCTGGT TTTTAGGTAT TTAGAGGCCA
  TGAGAATGGA TGTCAGCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397979191	MGP_WTSI_17_30140346	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253394909					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397979191	MGP_WTSI_17_30140346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30222375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8934	CpG island 8934	699 bp proximal
Gm50019	predicted gene, 50019	within coordinates
Rr525144	regulatory region 525144	417 bp proximal
Rr525145	regulatory region 525145	835 bp proximal
Rr525146	regulatory region 525146	1367 bp proximal
Rr525147	regulatory region 525147	1674 bp proximal
Tssr143600	transcription start site region 143600	955 bp upstream
Tssr143601	transcription start site region 143601	1079 bp upstream
Tssr143602	transcription start site region 143602	1377 bp upstream
Tssr143603	transcription start site region 143603	1452 bp upstream
Tssr143604	transcription start site region 143604	1628 bp upstream
Tssr147242	transcription start site region 147242	1219 bp downstream
Zfand3	zinc finger, AN1-type domain 3	1638 bp upstream