rs253396180 SNP Detail

Summary

• ID
  rs253396180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149558468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGGATTG TCTCATTTTC
  CATGCCAAAC AACTGTAATA GAAATCAGTA GCCAACTCCA TTTTCAACCG CATAGTTTGG
  CCAAGGGTAA AAAAACCACC TCAGTCAAAA ATTCTGGTCA GCAACACAGC TACCCAAGCA
  GCTCTCCCTG TTCTCCTCTA CACACCTTTT GTCTCTTTTT AGGCAGAGAG AGGAAGAAGC
  R
  CTTAGCATAC AGGATGGGGG CAAGAAGGAC TGGCAGCCTT CCTACTAATT GCCGAATCAC
  AGAGCACCAT GGCTTTGTGA GAGAGGGAGC CCATGCTTAG AAAGTAAGTT CCTAGCAAGG
  CTTTCTTCCT CCTATTCACT CATAAATGTT CCTCTAATAA GGTCGGAATG ATTTTACCTT
  TGGGTTCGAT GTTTAACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367160410	MGP_WTSI_5_150437578	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253396180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367160410	MGP_WTSI_5_150437578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149558468 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17098	CpG island 17098	523 bp proximal
Hsph1	heat shock 105kDa/110kDa protein 1	within coordinates
Rr399535	regulatory region 399535	1208 bp upstream
Tssr49917	transcription start site region 49917	1407 bp upstream
Tssr49918	transcription start site region 49918	1497 bp upstream
Tssr49919	transcription start site region 49919	1524 bp upstream
Tssr49920	transcription start site region 49920	1814 bp upstream
Tssr54646	transcription start site region 54646	1161 bp downstream
Tssr54647	transcription start site region 54647	1195 bp downstream
Tssr54648	transcription start site region 54648	1230 bp downstream
Tssr54649	transcription start site region 54649	1269 bp downstream
Tssr54650	transcription start site region 54650	1328 bp downstream
Tssr54651	transcription start site region 54651	1660 bp downstream