rs253401107 SNP Detail

Summary

• ID
  rs253401107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125872787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAATAA AGACACGTAA
  CTATCATCTC CCAAAGACCA AGCTGAGTTC TTAAGTGACA CCCACCCTCC CCACAGGAAA
  GAGAAAATTT GGGGCGCCCA AAGGTGAGAG GTGCCTGCAT TCTGCAGCTC TGGGTGACAG
  CTGGGGCTTT GGGTGTGTGC CTTTGTCTGA GAGGGCAGGG AAGGGGCGTG TTTGAGAGGA
  Y
  GAGTCTCTTA TTTTCTGACT CTGAGACCCC AGCTCAGGTC TCAGTGGGGC TCTTTATCCA
  GTCCCTCTTT GTGCTCCCTG CAGAACAGGG AGAGGACAAG CCCTCTCAGT GAACAGCTAG
  TTTGGGGGAG GGAGGTACCC TGAATGAAGA AACCATTTCG GGTCAGAGCA CCTTTCTGCC
  CCTCTAAGTC CCAAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373065211	MGP_WTSI_7_133417129	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253401107					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373065211	MGP_WTSI_7_133417129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125872787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	291 bp distal
Rr368426	regulatory region 368426	1714 bp downstream
Rr655453	regulatory region 655453	986 bp distal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	1191 bp downstream
Tssr69003	transcription start site region 69003	1172 bp downstream
Tssr69004	transcription start site region 69004	1160 bp downstream
Tssr69005	transcription start site region 69005	1141 bp downstream
Tssr69006	transcription start site region 69006	1123 bp downstream
Tssr69007	transcription start site region 69007	1091 bp downstream
Tssr69008	transcription start site region 69008	1028 bp downstream
Tssr69009	transcription start site region 69009	1006 bp downstream
Tssr69010	transcription start site region 69010	820 bp downstream
Tssr69011	transcription start site region 69011	757 bp downstream