rs253407428 SNP Detail

Summary

• ID
  rs253407428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45018790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCCTCT TGAGGCCACC
  ATGGCGATCA GCCACGCCCC CAGGGATGAC TCGAGAGATA TAGATGGGTG AGTTCTGCTC
  CTTGCCACCC ATGATGTTGA AGCCCAAACC CTCATCAGTC TTCGGTAGTT CCACGACCCT
  GGGATGTGCG TGGCCCTCAC TGGCCGTGAA AGCAGCCACT GTGGCCTGGA AGAGAGAAGA
  Y
  GCCTCAATGA GAGAGACCCT CTTTGAGACA TGGGCACTCC AGCCAGCGTA GCCGCAAAGA
  TCAAGTAGGG GAACCCTGAC ACAGCTCAAC AGGAGGCTAC CCTATACTGA CTCCGACCTG
  TGAGAACCCT TGCTTTCTTC CGAAAGTCAG GGAGAAGGGC ATCCTTAGTA CTTAACACCT
  GCCAATCTTG TTCTCAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371175703	MGP_WTSI_7_52624736	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253407428					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	T	C	C	C	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371175703	MGP_WTSI_7_52624736	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45018790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1494 bp distal
Cpgi19050	CpG island 19050	479 bp proximal
Gm45619	predicted gene 45619	662 bp downstream
Gm71276	predicted gene, 71276	1634 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	1418 bp downstream
Rr400311	regulatory region 400311	1161 bp upstream
Rr646422	regulatory region 646422	1179 bp distal
Rr646423	regulatory region 646423	1207 bp proximal
Rr646424	regulatory region 646424	1265 bp proximal
Rr646425	regulatory region 646425	1334 bp proximal
Tssr72377	transcription start site region 72377	1193 bp downstream