rs253409797 SNP Detail

Summary

• ID
  rs253409797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116149147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTGACT CAAGTTCAAT
  GGTGAAGAGT CAGCAGGGGC TGAGCAGAGC TCCCTCAACT GTTCCTGAGA CAACTGACAT
  GAAGTTAAAT GTTAGGTGTA AAACCCTGCC CATCTCACCA GCTCTGGCAA CTCCAGCGTG
  CTCCAGAACT AAGATTTTAA AAACATAGGG ATATTGGTAA TCCCAGCTGT TGGGAGCATC
  R
  ATTTTTGTAA GTAAATCTAG TTTAGGATCA ATATCAAATC TGTGTCTTTT GTGATTACCT
  AATAGCTAAA AGCTATCCAA AGGTATGTAT GTCAGTGGCA CCTAGAATGT ACAACCTAGG
  AAAAAGCTGA GCACAGATTC CAGACTCCTA GTATCTTCTA ATAGTATTTT CTGGTTGGAG
  CTTCAGTATT GAACCAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323487234	CHEV_10_115750298	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253409797					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116149147 () rs orientation: forward

Symbol	Name	Function Class
Ptprb	protein tyrosine phosphatase receptor type B	within coordinates
Tssr95861	transcription start site region 95861	1813 bp upstream