rs253419035 SNP Detail

Summary

• ID
  rs253419035
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6367330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CTAAGCTTAG CCTGGGTAGG
  W
  TAGTATCAGG TTAACCAGAG CTTAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323549893	CHEV_11_6317333	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253419035					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6367330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2558	CpG island 2558	542 bp distal
Gm71788	predicted gene, 71788	1617 bp upstream
Ppia	peptidylprolyl isomerase A	within coordinates
Rr246944	regulatory region 246944	within coordinates
Rr402411	regulatory region 402411	1252 bp downstream
Tssr100250	transcription start site region 100250	1547 bp downstream
Tssr100251	transcription start site region 100251	1517 bp downstream
Tssr100252	transcription start site region 100252	1463 bp downstream
Tssr100253	transcription start site region 100253	1098 bp downstream
Tssr100254	transcription start site region 100254	1013 bp downstream
Tssr100255	transcription start site region 100255	985 bp downstream
Tssr106715	transcription start site region 106715	1639 bp upstream