rs253423880 SNP Detail

Summary

• ID
  rs253423880
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71520543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTATGA ATCCATTTCT
  TTAATGTGTG CAGAATGCAA GTCTTTTGTT ATCTCTTCTT TAAAAGTTAG TTTCAGCTGA
  CTCGTGCAGG TCTGTTTAAC CTTAATCTTA CAAGCGAAAC AAATGTTATA ATCTGTTGAA
  TCAATCCCTT CTTCTCCAGC TTCAGCATAA GATCACTGCT AGAACTTTTA AGACTTCCTA
  M
  AAAGGGGAAA GAAGGCGATG TCAAGTTTTC GAGTAGGTGT GTAGATTTGC AGTCTGTGAG
  GTGACTACGG ACCCAAAGAG AAACCCATCC ACAAATATCT GGGAAGTGGT TGTAAATATG
  CGTGACAGCG TTGAGATATA TATTTCTGGG CTAGCTGACA GGTTTTGGGT GTAGGCAATA
  AATATCTTAA GAGTTACTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368727542	MGP_WTSI_6_71493553	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253423880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368727542	MGP_WTSI_6_71493553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71520543 () rs orientation: forward

Symbol	Name	Function Class
1700040L08Rik	RIKEN cDNA 1700040L08 gene	within coordinates
Chmp3	charged multivesicular body protein 3	277 bp upstream
Cpgi17526	CpG island 17526	183 bp proximal
Gm44194	predicted gene, 44194	1821 bp upstream
Rr399696	regulatory region 399696	108 bp upstream
Rr631970	regulatory region 631970	within coordinates
Rr631971	regulatory region 631971	545 bp proximal
Tssr57031	transcription start site region 57031	284 bp upstream
Tssr57032	transcription start site region 57032	312 bp upstream
Tssr57033	transcription start site region 57033	341 bp upstream
Tssr57034	transcription start site region 57034	416 bp upstream
Tssr57035	transcription start site region 57035	783 bp upstream
Tssr57036	transcription start site region 57036	1674 bp upstream