rs253425633 SNP Detail

Summary

• ID
  rs253425633
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135872834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGGCTGT TCCCACATTT
  CCCCCCATCT GTCACTTTAA ACAGCAAGAC TCTCTCTATT CCAACTGTAA GTCCTATAGC
  ACCCCCTGGT GGCATACCAG GAACAGCCTG TGATGGATGA TAGTGTCCTA GGAAACCCAA
  GGCACCTCCT CCCAGCTTTG CCCACAGCCT CTGCCGTATC CTTCCTCTAT TGTGGGGGGG
  K
  GGGGGGGGTC GTGATAATGC GGTCTGGTCT GGCAACTTTA CACCAGCTTC AGAAAGCTCC
  TCCTTGATAG CAGAGAGCAG GTCCACACTG CCCGAAGCCT GCGCGGCCCC AGGATGAGGG
  ATGGGGGTGA GCGGGCGTGG CATATGAGAT TTAGAAGTAA CAGTAGTACC TTGACAGAAA
  GGCAACTTTG ATCCTCATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss351554297	MGP_WTSI_1_137841673	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	G	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs253425633					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	T	G	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351554297	MGP_WTSI_1_137841673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135872834 () rs orientation: forward

Symbol	Name	Function Class
Gm71005	predicted gene, 71005	within coordinates
Rr419321	regulatory region 419321	within coordinates
Rr419322	regulatory region 419322	104 bp distal
Rr419323	regulatory region 419323	541 bp proximal
Rr419324	regulatory region 419324	769 bp proximal