rs253427429 SNP Detail

Summary

• ID
  rs253427429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:143577490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGTAACA TCATTACAGA GGACTCAAAG
  GATTCTTCAA CTTGACCCTC TGTGATTTCC TGAACGACTT ACATCCACGG CATCCATGGA
  ACAATAATCA CAAATGGTTT TGTTTTGTTT TTCCTTTGAA GGCTCTTCCT GAAGAGCACA
  Y
  AGGATCAATT TCTCAGACCC GTATGTAAAG CTCACTGCTT TTCCCCCGGT CTCACTGCAT
  TTCCCCGGTA ACTTTCTCCC CAACAAAGTC CTGCTTTCAG CTCCAATACT GTTTCAGCAA
  ACTTCCAAAC TCTCCTAATC GTCCCTTAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320010259	CHEV_1_145548882	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253427429					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:143577490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc73	cell division cycle 73, Paf1/RNA polymerase II complex component			Intron
				Noncoding-Transcript-Variant
Cpgi835	CpG island 835			304 bp proximal
Rr419927	regulatory region 419927			678 bp proximal
Rr419928	regulatory region 419928			1131 bp proximal
Rr419929	regulatory region 419929			1160 bp proximal
Tssr14091	transcription start site region 14091			1030 bp downstream
Tssr14092	transcription start site region 14092			1052 bp downstream
Tssr14093	transcription start site region 14093			1080 bp downstream