rs253427736 SNP Detail

Summary

• ID
  rs253427736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGACGTGA AATCCACAAA
  GAATCAATTA GAAGTTTTAA AAAGATTTTA TCTGGGAAAA CAAATGCCTG AACGCAATAA
  GTCAGGTATG GGCTGGAGGA GGACTAATGA AGAGTGATTT GGTTTTGTAG ATATAAAAAA
  AAATTTTTTC AAGACAGGGT TTCTCTGTGT CGCCTTGGCT GTCCTGGAAC TCACTCTGGA
  R
  ACCAGGCTGG CCTCATATTT GCTATATAGC CCAGGTTGGC CTTAACCTCC TTGTCCTCCT
  TTCTCTACAT CCTGAATCCT GATTTTAGAA ACTTGTGTCA TAACTTGGGA ATTAGACTAG
  CCTGAGCTAA GTTTCTGGCC AGCCTGAAAA ATTAAAGATG TTATCTTTAA CAATTAAAAA
  AAAAAAAAAA AAAAAAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672277	CHEV_11_53136857	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253427736					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	1236 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	1010 bp proximal
Rr447002	regulatory region 447002	1280 bp proximal
Rr447003	regulatory region 447003	1335 bp proximal
Tssr101382	transcription start site region 101382	1319 bp upstream
Tssr107917	transcription start site region 107917	1235 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	1334 bp upstream