rs253432284 SNP Detail

Summary

• ID
  rs253432284
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129273389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGAGTTCGA ATCCCAGCAA
  CCACATGGTG GCTCACAACC ATCCATAATG AGATCTGACG CCCTCTTCTA GTGTGTCTGA
  AGACAACTAC AGTGTACTTA CATATAATAA ATAAATCTTT TTTTAAAAAA AGAAAGAAAA
  TCATTAGGAC ACCAGGTGTT GTGGCACATG CATGTAATGC CAGAACTCAG GAGGCTCTGA
  S
  TTCGAGACCA CCCTGGTCTA CATAGTTCCA GGACAGGCAG AGCTACATAG GAGACCCTGT
  CTGGGGGACA CACACACACA CAGAGAGCAG GCAGGTCTCT CTGTGCTGTT CTCTTTCAGC
  CAGGATTAAG CTCAAAACAA CTAAGCCAAC CAGGAGGATC CCTTTCCCGG TGGAGGCCCG
  GTGTGCAGGA GCCTTTTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312506	CHEV_4_129056840	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253432284					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129273389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1517 bp distal
Gm12980	predicted gene 12980	248 bp upstream
Rr377177	regulatory region 377177	218 bp upstream
Rr600215	regulatory region 600215	1491 bp distal
Rr600217	regulatory region 600217	1224 bp distal
Tssr39145	transcription start site region 39145	1819 bp upstream
Tssr43497	transcription start site region 43497	1758 bp upstream
Tssr43498	transcription start site region 43498	1672 bp upstream
Tssr43499	transcription start site region 43499	1646 bp upstream
Tssr43500	transcription start site region 43500	590 bp upstream
Zbtb8a	zinc finger and BTB domain containing 8a	1568 bp upstream