rs253437004 SNP Detail

Summary

• ID
  rs253437004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36917364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGTCCC ACACAAATTC
  CCTGACGCAC CCCTGAAATG CTGCAAGGAT TTGTCTGTAA AGAACGCTCC AGCCTGGCAC
  GAACAGTTTT CTCCATCTGC AGAATAACCA CTGGGAGACT TTCTATTTTT TTCCTTTTGT
  CCATTCTATT AATAAGCTGC TTTAATTTCC CTTTTCAGTT ACATTAATTA ATGTTTCCAT
  Y
  CAGTATCACA TAAGCGGATT CACTAGTACT TAAAACATTT GCATTTTGGA TGGAAAAATA
  TAAACTTTAA AAAAGCCTCC CAACAGTGTA GCTGAGACTC ACATTCCTTA ACATGAAATG
  GGGGGGGGGG CTAAATAAAT CCATCCAATA AACCGCCACA AACAAAAATT ACAAACCCAC
  GAAAAGACAA AATGCGAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388276789	MGP_WTSI_13_36825259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253437004					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276789	MGP_WTSI_13_36825259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36917364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5450	CpG island 5450	1047 bp distal
Cpgi5451	CpG island 5451	1421 bp proximal
Gm56572	predicted gene, 56572	1498 bp upstream
Nrn1	neuritin 1	Intron
Rr477392	regulatory region 477392	1655 bp distal
Rr477393	regulatory region 477393	1154 bp distal
Rr477394	regulatory region 477394	within coordinates
Rr477395	regulatory region 477395	1077 bp proximal
Rr477396	regulatory region 477396	1509 bp proximal
Tssr119271	transcription start site region 119271	1466 bp upstream
Tssr122097	transcription start site region 122097	876 bp downstream
Tssr122098	transcription start site region 122098	903 bp downstream
Tssr122099	transcription start site region 122099	981 bp downstream
Tssr122100	transcription start site region 122100	1014 bp downstream
Tssr122101	transcription start site region 122101	1036 bp downstream
Tssr122102	transcription start site region 122102	1060 bp downstream