rs253437399 SNP Detail

Summary

• ID
  rs253437399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGCAGA GCCAGTCGTG
  GGTTGAGAGA TAGGAAGGTT GGGTGAGGGG GTTCACTCTA GCTCTGTTTC TTTCTTCCCC
  TAGCTTCTGT GTTGGAATCC ATCCCCTCCC GATCTTCACC ATCTTGCCCT GTCCCCTCTT
  CCGCAGACTC ACTTCCTCGC TTCAAGACCT TCACCCCAAG TTAAAAGTTC TTTGCTTCAC
  Y
  ACTGGGTTAG AGGCCTCTGG TCCCTCTTTC ACCCACTTAC CTGCCACCTC TTGTGTCCCA
  CCACACACTA ACTGTATAAG TCATGTCACC AACTTTAGCT CTGGGTCTTT TCCTTGTCTC
  CCCAACCCCC AACCTCCTGA TCTCTTAGTC TTCAAGGCTT CTGGTTCACC TTCCCGTTTG
  CTCCAGTCTC CCCCATGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139523	CHEV_7_31910834	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253437399					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	390 bp distal
Cpgi18837	CpG island 18837	379 bp proximal
Rr645025	regulatory region 645025	41 bp proximal
Rr645026	regulatory region 645026	1019 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	901 bp downstream
Tssr71936	transcription start site region 71936	944 bp downstream
Tssr71937	transcription start site region 71937	1106 bp downstream
Tssr71938	transcription start site region 71938	1135 bp downstream
Tssr71939	transcription start site region 71939	1178 bp downstream
Tssr71940	transcription start site region 71940	1349 bp downstream