rs253443112 SNP Detail

Summary

• ID
  rs253443112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80305344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTCTCGT CCTCCCTGGA
  AATCTCCAAA CTTCTCACTC AGTTTTCTCT TCCATCAACA GTCCCAGGAA ATAAATTCGA
  GAGTGAAGAA GGGGGAAAGA CCCTCAGCCC TCAGTCCTTC CAGAAAAGGG GGGGGGGGGC
  TGACAGGAAG AGGGCGGTGT CTGTAAGCTA CTAATACATT ACAAAGAAGT CAGTTCAAAG
  Y
  CAAGAGACGC TCTTAAGTTG CTGTTGCAGT AAGAGACAGG GGCAGGGCCC CAGGTTGCCT
  GTTTAAGGAA GCCCATTGTG GTGTGTTTTA AATTACCTCT GCTGGTCTGA TGAAGTGAGC
  AAAAGGGCAC CGTTTCAGGG CTTAGGATTC CTGAGTGAGC TAATACAGGA TGCCTTTAGC
  TGGGGGAAAA AAAAAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386629937	MGP_WTSI_12_81359557	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253443112					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386629937	MGP_WTSI_12_81359557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80305344 () rs orientation: forward

Symbol	Name	Function Class
Actn1	actinin, alpha 1	within coordinates
Cpgi4813	CpG island 4813	395 bp proximal
Gm47766	predicted gene, 47766	401 bp upstream
Rr468866	regulatory region 468866	within coordinates
Rr468867	regulatory region 468867	412 bp proximal
Rr468868	regulatory region 468868	1177 bp proximal
Rr468869	regulatory region 468869	1511 bp proximal
Tssr116876	transcription start site region 116876	1572 bp downstream
Tssr116877	transcription start site region 116877	1744 bp downstream
Tssr116878	transcription start site region 116878	1765 bp downstream
Tssr116879	transcription start site region 116879	1786 bp downstream
Tssr116880	transcription start site region 116880	1809 bp downstream
Tssr116881	transcription start site region 116881	1926 bp downstream
Tssr116882	transcription start site region 116882	1950 bp downstream