rs253444641 SNP Detail

Summary

• ID
  rs253444641
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40274090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGAGGA CCGGAGTTCA
  AATCCCCAGA ATCCATGTAA AAGCCAGATA TAATCTCATA CACCTGTAAC TGCAGAGCTC
  TGCAAGGTGG ACCAGAGACA GGAGGAGCTC TGGGACTTGC TAGCTACCAA TGTAGCTACA
  GGTTCAGTGA GACATCCTGT CTCCTTATCT CAAAGAAAAA AGGGGAAAAG TGATAGAGCA
  R
  GGTACCAGAT GTCTTCCTCT GCCTCTGTGC ACAAACTTGA GCGCTCTCTC TCTCTCTCTC
  TCTCTCTGAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC GTCAGTACTT
  AGTAATTAGA ATATTCTAAT TATATTGAGT GAATTATAAA TACATCTGTC TAGCTATAAT
  AGACATATAA TGCTCTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915574	CHEV_9_40170379	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253444641					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40274090 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	423 bp downstream
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr200102	regulatory region 200102	1511 bp proximal