rs253445216 SNP Detail

Summary

• ID
  rs253445216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103059633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTGTGC ATGCTGTGCA
  CTTTGCACTT GACCACAGAG CCACATCCAT AGCTTGCCTT TCTCCTTAAA GAGACATCTA
  CTGACTACTG ATACATGCTC AGTCACCTGA GTTAGGAGTG TTCCCAATGG CTGCACATTC
  CTTCCATTAA AGATGACAAA GTGACAATGG TCTGGAAATG TCACCCTGGC TGTGTGACTG
  Y
  ATCGATCACC ACAGCCATCA GTCCGTCCTG CCTGTCATAC CACCTGCACA CGGAAGGGGG
  CAACGCAGAC TTACGGAAAG GAAACATTGT TCCTAAACTT GACAACCAAG CTTTGCTGGT
  AGAATTTTCT CCATTGTGGT CCATGTTTTG GGAAGATGCT TTCTATGAAG CCAACAGAAT
  TGAATAGGTG ATGATTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517771	MGP_WTSI_11_103030121	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253445216					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517771	MGP_WTSI_11_103030121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103059633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	1740 bp proximal
Gm51919	predicted gene, 51919	within coordinates
Rr403012	regulatory region 403012	within coordinates
Rr457534	regulatory region 457534	1529 bp distal
Rr457535	regulatory region 457535	1385 bp distal
Rr457536	regulatory region 457536	442 bp distal
Rr457537	regulatory region 457537	within coordinates
Rr457538	regulatory region 457538	1346 bp proximal
Rr457539	regulatory region 457539	1456 bp proximal
Tssr105316	transcription start site region 105316	1609 bp upstream
Tssr105317	transcription start site region 105317	1686 bp upstream
Tssr105318	transcription start site region 105318	1920 bp upstream
Tssr105319	transcription start site region 105319	1950 bp upstream