rs253446376 SNP Detail

Summary

• ID
  rs253446376
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61118796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGTATCA CTTCTACTTG
  GACGCATGCC TTTTTACAGC CAAACTTCCG TGTATTTCGT AAATGGATTT TGCGTTAACG
  GACATCTATG TGATAACTAG ACCTCTCAAG TTTACTGTAA AGAAGAGTCG GATGGGTTGG
  GAAGTGGGTG GGAAGAGGAG TGAGAGGAAG TTTTAACCCC ATTCCAGAGG GTCTTTTTTT
  K
  GGGGGGTGTC CCTTCTGGGG GAGGGTGCTT TCTGAGGTGG CCTCACCCCC CAGGGAGCAT
  GGTTTCCTTC CATTATGGTC CCCAAAGTCA GCTGACAAGA TTTCTTCCAG AGCCAGCATG
  ACTAACACAC AGTGAGTCAG GTCAGGGGAG GCTATCAGGA AGGGGTTATC TAGACTTGGC
  ATCTCTGGAA CTGGAGACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400872505	MGP_WTSI_18_61145378	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	T	G	G	T	T	G	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253446376					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	G	T	T	T	T	G	G	T	T	G	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400872505	MGP_WTSI_18_61145378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61118796 () rs orientation: forward

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Cpgi10101	CpG island 10101	788 bp distal
Rr538733	regulatory region 538733	1929 bp proximal
Tssr5345	transcription start site region 5345	1581 bp downstream
Tssr151376	transcription start site region 151376	1392 bp downstream
Tssr151377	transcription start site region 151377	1324 bp downstream
Tssr151378	transcription start site region 151378	1273 bp downstream
Tssr151379	transcription start site region 151379	42 bp downstream
Tssr151380	transcription start site region 151380	18 bp upstream
Tssr151381	transcription start site region 151381	52 bp upstream
Tssr151382	transcription start site region 151382	156 bp upstream
Tssr151383	transcription start site region 151383	192 bp upstream
Tssr151384	transcription start site region 151384	238 bp upstream
Tssr151385	transcription start site region 151385	278 bp upstream
Tssr151386	transcription start site region 151386	338 bp upstream
Tssr151387	transcription start site region 151387	378 bp upstream
Tssr151388	transcription start site region 151388	395 bp upstream
Tssr151389	transcription start site region 151389	1805 bp upstream