rs253449560 SNP Detail

Summary

• ID
  rs253449560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:96182634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAACTTTT AGGTTTGTAT
  TCACTAAACA GAGACTAGTC AAAGTGTTAA GAATTTAAAT TCTATCCATC AGTAGACTTC
  CGTTTTGAGG ATTACACCTC TTCTACAGAA AGCAACCCTA AAAAATTCCT GGAAAAGCTT
  TAAAAGGTTA GATTCCCTCC AAGCCTTTGA CACTTTCTCT GAAAACCAAA ATTGCTACTA
  R
  GTACGTGTGT GGATAGACAC ACACTCGTAG CATTCGCTGC CTTCCGAGTG TCAGCCTCCC
  CCTTGTAAAG GGCCGACATG TCATCCCTCC ACTCTGCTCC TGGACCTGAC AATCAAAGCC
  AAGCAGGCCA GTCCGCCTGC CTGCCTGCCC GGCGGCGCAG GAGTGGGGTG GAAGGACGCT
  CCGACGTCCA CCTAGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395085922	MGP_WTSI_15_96115184	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253449560					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395085922	MGP_WTSI_15_96115184	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:96182634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7599	CpG island 7599	within coordinates
Cpgi7600	CpG island 7600	1536 bp proximal
Gm38469	predicted gene, 38469	within coordinates
Gm62599	predicted gene, 62599	411 bp downstream
Rr369997	regulatory region 369997	380 bp downstream
Rr391146	regulatory region 391146	35 bp upstream
Rr508521	regulatory region 508521	1179 bp distal
Rr508522	regulatory region 508522	655 bp distal
Rr508523	regulatory region 508523	within coordinates
Rr508524	regulatory region 508524	824 bp proximal
Rr508525	regulatory region 508525	942 bp proximal
Rr508526	regulatory region 508526	1932 bp proximal
Tssr132814	transcription start site region 132814	1252 bp upstream
Tssr136021	transcription start site region 136021	738 bp downstream
Tssr136022	transcription start site region 136022	956 bp downstream
Tssr136023	transcription start site region 136023	1132 bp downstream