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rs253451139 SNP Detail
Summary
  • ID
    rs253451139
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:57530921 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TATTACAGCA ATGTGGGATC
CTCTGGGTGG ACCACGGAGG TGTCATGAAA ACAGCAGAGC TCTGTGCTTC CCTGACCGTG
GAGACCAGGG TTGGAGCTCT AGGCACTCAC TGTGATGGTC AGGGGTTGGC GGCTGTTGGG
TGTGTTGATG CTTAGCTTGG CCACGCCATC ATCTTGGGTG AGAGCCTTTG CATTAGATCC
Y
TGAGTGACCA CCAGCACTTT GCTGGCCGGA GAGCCATCGG GGTTGGTCAC GAACACCTGT
GGACAGAGTC AGGTGGACAA GGGTCAGGCA GTGTGGTCAG AGTGACGGAA GATGGAAGTT
GGGATTAGCC CTGGCTCTTA CCATGAGGTC AAAGGGCATG GCTGGCTTGA AGAATTTGGG
TGTCTTGGTG AAGTGGATCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398573184 MGP_WTSI_17_57363344 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253451139 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398573184 MGP_WTSI_17_57363344 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:57530921 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
C3 complement component 3 within coordinates
Cpgi9399 CpG island 9399 401 bp proximal
Tssr145377 transcription start site region 145377 1690 bp downstream
Tssr145378 transcription start site region 145378 786 bp downstream
Tssr145379 transcription start site region 145379 711 bp downstream
Tssr145380 transcription start site region 145380 666 bp downstream
Tssr145381 transcription start site region 145381 612 bp downstream
Tssr145382 transcription start site region 145382 58 bp downstream
Tssr145383 transcription start site region 145383 13 bp upstream
Tssr145384 transcription start site region 145384 146 bp upstream
Tssr145385 transcription start site region 145385 1328 bp upstream
Tssr148939 transcription start site region 148939 1992 bp upstream
Tssr148940 transcription start site region 148940 1648 bp upstream
Tssr148941 transcription start site region 148941 1575 bp upstream
Tssr148942 transcription start site region 148942 1075 bp upstream
Tssr148943 transcription start site region 148943 1035 bp upstream
Tssr148944 transcription start site region 148944 1021 bp upstream
Tssr148945 transcription start site region 148945 984 bp upstream
Tssr148946 transcription start site region 148946 972 bp upstream
Tssr148947 transcription start site region 148947 722 bp upstream
Tssr148948 transcription start site region 148948 638 bp upstream
Tssr148949 transcription start site region 148949 582 bp upstream
Tssr148950 transcription start site region 148950 28 bp upstream
Tssr148951 transcription start site region 148951 within coordinates
Tssr148952 transcription start site region 148952 16 bp downstream
Tssr148953 transcription start site region 148953 200 bp downstream
Tssr148954 transcription start site region 148954 251 bp downstream
Tssr148955 transcription start site region 148955 398 bp downstream
Tssr148956 transcription start site region 148956 431 bp downstream
Tssr148957 transcription start site region 148957 959 bp downstream
Tssr148958 transcription start site region 148958 1182 bp downstream
Tssr148959 transcription start site region 148959 1342 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory