rs253460296 SNP Detail

Summary

• ID
  rs253460296
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125566947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCGAATA CTAAGGCAGC
  AGCCAAGAGA ATCTGGGAAG AAGGCCACCT CACCTTCTCA TTGACCACGG GCTCTCGAGT
  GCTCAGGACT TAGCCTGAAC TCCAGGGCCA TCCAAACACA GGTTTGAATG AAACCAGTGC
  AGGTGACTAG GAGACAAAGG CGCCTCGCCG CCGCCAAGCT TTTGTGCTTA GGCTCAGAAC
  S
  GCTTGTTAGT ATCCTGCCTG ACAACTTTGT GAGCTTTTTC TATCCACTGG GAAGGCCTTT
  TGTGGCGTCC TATACCTTCC TTTCTGACTT TCTTTTTGCA CCTCCACATT TGGCAAACAC
  GAAAGGAATG GCTAAATCAG AACTCATATA CCCGGAACCT AGGGAGACAG GATCAGGGGA
  GTGGAAGGTG GGAGGAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355559552	MGP_WTSI_2_125550763	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253460296					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355559552	MGP_WTSI_2_125550763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125566947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	1393 bp distal
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	609 bp proximal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	567 bp proximal
Rr367290	regulatory region 367290	289 bp downstream
Rr564270	regulatory region 564270	1150 bp distal
Rr564271	regulatory region 564271	1147 bp distal
Rr564272	regulatory region 564272	within coordinates
Shc4	SHC (Src homology 2 domain containing) family, member 4	879 bp upstream
Tssr26008	transcription start site region 26008	1490 bp upstream
Tssr26009	transcription start site region 26009	1336 bp upstream
Tssr26010	transcription start site region 26010	1304 bp upstream