rs253461434 SNP Detail

Summary

• ID
  rs253461434
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:38719313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TCTCGAGCTT TCCAACGCCA
  A
  CTTGGCGCCC CGGCTTGCAA AAGAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321518863	CHEV_5_38953209	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253461434					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38719313 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57313	predicted gene, 57313			within coordinates
Gm72219	predicted gene, 72219			1407 bp upstream
Rr399063	regulatory region 399063			within coordinates
Rr610564	regulatory region 610564			346 bp distal
Rr610565	regulatory region 610565			148 bp distal
Rr610566	regulatory region 610566			within coordinates
Tssr46063	transcription start site region 46063			45 bp downstream
Tssr50812	transcription start site region 50812			829 bp upstream
Tssr50813	transcription start site region 50813			799 bp upstream
Tssr50814	transcription start site region 50814			348 bp upstream
Tssr50815	transcription start site region 50815			330 bp upstream
Tssr50816	transcription start site region 50816			290 bp upstream
Tssr50817	transcription start site region 50817			238 bp upstream
Tssr50818	transcription start site region 50818			178 bp upstream
Tssr50819	transcription start site region 50819			1245 bp downstream
Tssr50820	transcription start site region 50820			1274 bp downstream
Wdr1	WD repeat domain 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant