rs253461434 SNP Detail

Summary

• ID
  rs253461434
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38719313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT TCTCGAGCTT TCCAACGCCA
  A
  CTTGGCGCCC CGGCTTGCAA AAGAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321518863	CHEV_5_38953209	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253461434					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38719313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	within coordinates
Gm57313	predicted gene, 57313	within coordinates
Gm72219	predicted gene, 72219	1407 bp upstream
Rr399063	regulatory region 399063	within coordinates
Tssr46063	transcription start site region 46063	45 bp downstream
Tssr50812	transcription start site region 50812	829 bp upstream
Tssr50813	transcription start site region 50813	799 bp upstream
Tssr50814	transcription start site region 50814	348 bp upstream
Tssr50815	transcription start site region 50815	330 bp upstream
Tssr50816	transcription start site region 50816	290 bp upstream
Tssr50817	transcription start site region 50817	238 bp upstream
Tssr50818	transcription start site region 50818	178 bp upstream
Tssr50819	transcription start site region 50819	1245 bp downstream
Tssr50820	transcription start site region 50820	1274 bp downstream
Wdr1	WD repeat domain 1	within coordinates