rs253466668 SNP Detail

Summary

• ID
  rs253466668
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72429084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATACTATG TTGGGCTGTA
  TACTCTGGGC TGCAGAGAAA TTTGCCAAGG CCACACTAGT GCATAAAGTA GGCATGAGTT
  AGCCAGATAG AAGTGATATT TCACTCTTTA TTAATATCCT TTGATGCAAA ATTAAGAGTG
  TTGTTAATCT TGTTAACTCA TTTATAAGTG CACTATTTTT TTCTTTCTAT TGATACAGGC
  W
  TTTAATGTGT GCCCTGACTG GTCTTGAACT CCGTAGACTA GGCTAGCCTC ATATTCACAG
  AGATCTGTTT AACTCTGCTT CTCAAGTACT GAGATTAAAG GTGTATGTCA CTATGCTTGG
  CTTTATAAGA AAACAGTTTA AAAAAATATA ATCTTTTATT AAAGAGCTGA ATGGTTCACC
  TGTTAACATC TAAGTTATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343251	CHEV_2_72436797	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253466668					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72429084 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	368 bp distal
Rr558999	regulatory region 558999	1989 bp proximal
Tssr18356	transcription start site region 18356	1192 bp downstream