rs253467134 SNP Detail

Summary

• ID
  rs253467134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgcctctgc ttcccaagtg ctgggatcag
  aggtgttcaa catgaccagc aggcCTCTTG ATTGCTTAGG TGTGtgtgtg tgtacatgtg
  cgtgtgtgat gtgggtgggg gtggctacgt atgtcatgac gcacatgtgt caatcaaagg
  R
  cgactctgtg gagttccctc cttccatttt gacctggatc cagtgaccga ccccaaatct
  ctgagattgc acagcaagtg cctttgtctg ctgaactcga tctcacagct ccgcgggagc
  ttcacctgct tcttgttgtt gttgttgttt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068364	CHEV_1_154656252	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253467134					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684873 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	728 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	1332 bp downstream
Tssr9424	transcription start site region 9424	1296 bp downstream
Tssr9425	transcription start site region 9425	1246 bp downstream
Tssr9426	transcription start site region 9426	1224 bp downstream
Tssr9427	transcription start site region 9427	1206 bp downstream
Tssr9428	transcription start site region 9428	1188 bp downstream
Tssr9429	transcription start site region 9429	1163 bp downstream
Tssr9430	transcription start site region 9430	985 bp upstream
Tssr14234	transcription start site region 14234	809 bp upstream
Tssr14235	transcription start site region 14235	802 bp downstream
Tssr14236	transcription start site region 14236	1487 bp downstream