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rs253472290 SNP Detail
Summary
  • ID
    rs253472290
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr5:122241419 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTCCGCAGT GTGAGCCTGG
    CTTCCAGCAC CACCCGCTCC TGTCCTCAGG ACTCAGAGCC GCGACGAACA GCTCTGTGGG
    TTGGGCACCG CGCAGTTCAT CTTTGTGACT AATGCAGCTT CCCGTTTTAA GAAGGAAGGG
    GTCGGCTTTG TCTCGTTTGT GCTTTGGAAG GAGGGTTTGT GCTTTGGAAG GAGGGAAAGC
    W
    GGCATGGGGT GTGTGCAGCT GTGGGCGGCA GCAGGTCTGA CAGAAAGAGC TCCCTCAGAG
    ACTGGGTATG AGCTCTCTGC CTGCAGGGCT CACAGGTCTG ACTAAGAATG GCATTGCAAC
    CAAAGCATTA ACTTGCATGA AAGGTTTAGG GCCTGAAGAC ACTTGCTTAT TTAATGAGCT
    CAGGTCTCAT GTAGCCCAGG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366510650 MGP_WTSI_5_122553365 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253472290 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss366510650 MGP_WTSI_5_122553365 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:122241419 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Myl2 myosin, light polypeptide 2, regulatory, cardiac, slow within coordinates
Rr108983 regulatory region 108983 582 bp proximal
Rr124298 regulatory region 124298 within coordinates
Rr407055 regulatory region 407055 1507 bp distal
Tssr48625 transcription start site region 48625 1557 bp downstream
Tssr48626 transcription start site region 48626 697 bp downstream
Tssr48627 transcription start site region 48627 622 bp downstream
Tssr48628 transcription start site region 48628 475 bp downstream
Tssr48629 transcription start site region 48629 435 bp downstream
Tssr48630 transcription start site region 48630 381 bp downstream
Tssr48631 transcription start site region 48631 189 bp downstream
Tssr48632 transcription start site region 48632 169 bp downstream
Tssr53075 transcription start site region 53075 591 bp upstream
Tssr53076 transcription start site region 53076 518 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory