rs253474878 SNP Detail

Summary

• ID
  rs253474878
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151246790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAATGCAG TGCAATTTTA CTTAAGAGCA
  GATTACTTTG CCATTCAACT GGACAGAAAA AAAAATATGT CTATAAGCTA TTGAAAAGGT
  CTGATTTAGG ACctggagag atggctcagc agttaagagc actgtctgct cttccagagg
  W
  cctgagttca attcccagta accacatggt ggctcacaac catctgtaat gggatctgat
  gccctcttca ggtgtgtctg aagacagcta cagtgtactc atatatatat ataaaataaa
  aaatttttta aagaGGTTTG ATTTAGGAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320055952	CHEV_1_153218169	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253474878					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151246790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr420285	regulatory region 420285			531 bp proximal
Swt1	SWT1 RNA endoribonuclease homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant