rs253480693 SNP Detail

Summary

• ID
  rs253480693
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101943244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACGATTA AAGAGAGACT
  TCTCCCACTG TGAGCCCCAG GACTAGTCCA GATCCGTCTT TGCGTATTTC TCATTAGTTG
  ACCTCAGCGT GAACGATCAT TCTTGAGAAA GCAAGTATCT GGTATATATT CGAGATGAAG
  CAGAGGTAGT CGAAGTCACT GCCCTGGGGG AATTCCCGAT ATGGTGGGTT CAGTGCGTTC
  M
  GCACATTTAT TTCTATTGCT TCGAGCACTG TGCTTGGTTT GGGAGATGCA AAGATGATCG
  CTTTTGGACA CAATCATCAT CCCTTGGCAA ACACTCCTCC TGCCTCCTTT GTGCTAAGTA
  ATGAAGCTTT ACCTGGGGAC AATGAAAAGC TTGCACCTGA GCCAGATCAA GAGGAATTTG
  CTAAGCCTGG GAGAACAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387128090	MGP_WTSI_12_103215195	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253480693					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387128090	MGP_WTSI_12_103215195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101943244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5001	CpG island 5001	462 bp distal
Cpsf2	cleavage and polyadenylation specific factor 2	within coordinates
Ndufb1	NADH:ubiquinone oxidoreductase subunit B1	1247 bp upstream
Rr387709	regulatory region 387709	201 bp downstream
Tssr3923	transcription start site region 3923	1099 bp upstream
Tssr114729	transcription start site region 114729	1614 bp downstream
Tssr114730	transcription start site region 114730	1234 bp downstream
Tssr114731	transcription start site region 114731	981 bp downstream
Tssr114732	transcription start site region 114732	968 bp downstream
Tssr117383	transcription start site region 117383	1239 bp upstream
Tssr117384	transcription start site region 117384	1209 bp upstream
Tssr117385	transcription start site region 117385	1061 bp upstream
Tssr117386	transcription start site region 117386	1039 bp upstream
Tssr117387	transcription start site region 117387	1001 bp upstream
Tssr117388	transcription start site region 117388	950 bp upstream
Tssr117389	transcription start site region 117389	737 bp upstream
Tssr117390	transcription start site region 117390	706 bp upstream
Tssr117391	transcription start site region 117391	684 bp upstream
Tssr117392	transcription start site region 117392	98 bp upstream
Tssr117393	transcription start site region 117393	71 bp upstream