rs253483992 SNP Detail

Summary

• ID
  rs253483992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126574964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCTCCA GAGCCCTTCT
  TCCTCCTTTT CTGCCAAGGC ACTTCCTTAG GCAAGACAGC CAACATGCAG TCCCCGACCC
  GGCTAATTGG TTGAAATCTT AGGGTACTCG GCAGGAGGGG GGACGGAAAG TTCTAAGGGG
  ACCCTATGAT GGGCCTCAGG GGATTGGGAG TCCGGGAAAG AAGGTTGGGA AGAGGGAGAG
  Y
  CAGGGAAGTG CTGCTCCGGA TTGCTATAAA GACCTAAATG TTTACGGAAG TTCTATGGTT
  CCGTTGCTAG GAGACTAGAG GTTCTAGAAC TAAGGACAAT GTCCTAGTGT GCCATACTGG
  CTCTCCTGAT TCCTTCTTGG AGGCGGTGAC CCCAGAGTTA TATCAAGGCA TTTAGGAGAT
  GGAAAGGCGT TAGGGTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078364	MGP_WTSI_7_134119306	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253483992					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078364	MGP_WTSI_7_134119306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126574964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase			666 bp upstream
Cdiptos	CDIP transferase, opposite strand			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi19724	CpG island 19724			within coordinates
Gm73941	predicted gene, 73941			754 bp downstream
Rr368439	regulatory region 368439			174 bp upstream
Rr655656	regulatory region 655656			15 bp distal
Rr655657	regulatory region 655657			within coordinates
Tssr2401	transcription start site region 2401			788 bp upstream
Tssr69140	transcription start site region 69140			1423 bp downstream
Tssr69141	transcription start site region 69141			168 bp downstream
Tssr69142	transcription start site region 69142			487 bp upstream
Tssr69143	transcription start site region 69143			546 bp upstream
Tssr69144	transcription start site region 69144			615 bp upstream
Tssr69145	transcription start site region 69145			640 bp upstream
Tssr69146	transcription start site region 69146			732 bp upstream
Tssr69147	transcription start site region 69147			755 bp upstream
Tssr69148	transcription start site region 69148			818 bp upstream
Tssr74865	transcription start site region 74865			376 bp upstream
Tssr74866	transcription start site region 74866			within coordinates
Tssr74867	transcription start site region 74867			52 bp downstream
Tssr74868	transcription start site region 74868			300 bp downstream
Tssr74869	transcription start site region 74869			332 bp downstream
Tssr74870	transcription start site region 74870			340 bp downstream