rs253490385 SNP Detail

Summary

• ID
  rs253490385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100429239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGAAGG GATGGGAGCT
  TGCCTTGCTG CCTGCCACGG GGGAGAAGAG GACACATCTA GGGTGAGGGA GTTATGGAGA
  GAGAAGCAGG CAGATAAATC GGAGTGGGGA TTGGTCAGGG CTGCCCCCAG TCCCCAGTTC
  CCAAGGCCCC TCTCTCTGCA AGTGTTACAC ATTAAACAGG ATTTTACAGT AAATGAAGAG
  R
  TGTTTTGAGT GTTGAAGTTT TTTCTCTGGA ACCCTCCTCT GTGGCCTCCC CCAGGATAAG
  CTGGCCTTGG TTGGCATTTT GCTGATCAGG AAAAGAAAAG GGCAGAGGGA AGAGTGACTT
  GAAGCTGCAA ACAGGAGCCT GGCAAAGCCA CCATCTGAGC CTCCTCTCCC GCTTTTCCTT
  GCTCTGCTTT GATTGGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404178828	MGP_WTSI_X_98580972	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253490385					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404178828	MGP_WTSI_X_98580972	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100429239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	588 bp distal
Gjb1	gap junction protein, beta 1	4 bp downstream
Rr692834	regulatory region 692834	668 bp proximal
Tssr161658	transcription start site region 161658	1892 bp downstream
Tssr161659	transcription start site region 161659	1856 bp downstream
Tssr161660	transcription start site region 161660	1831 bp downstream
Tssr161661	transcription start site region 161661	1322 bp downstream
Tssr161662	transcription start site region 161662	1179 bp downstream
Tssr161663	transcription start site region 161663	1125 bp downstream
Tssr161664	transcription start site region 161664	990 bp downstream
Tssr161665	transcription start site region 161665	760 bp downstream
Tssr163884	transcription start site region 163884	952 bp upstream