rs253491509 SNP Detail

Summary

• ID
  rs253491509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44023529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAGAGA AAATACTAGT
  GAAAAATACT GTATCTGTAT TGTCTATACA ACTATTTTTC CTTGACATTA TTTCCTAAGT
  AAGATATTTC ACCACCACGT ATACAGCACT TATAGCATAT TCGGTATTAA GAATGTTCTA
  GAGATGATGA GGGATGGGGA AGGAAGCTGT GATGGCAACA CAGCCTGAAT TCCCAGTGCC
  Y
  GGAAGGCTGT GGAATGAGGG TGAAGGTTCC GTTGGGTCTG GGCTAAACCT GGGACTCTAA
  GTGATAATGA AAACAACAAC AATAAAGTCT GTGCTAGGAC CTGGGCGCAG TGGAAGCTGC
  ACTGATCATC TGGCCGTCTG CTTTGAACTT CTAGAACTTC CTCCCAGGTG GAGTGAAATG
  CTTGTAAAGA TGCCCAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380208592	MGP_WTSI_10_43867339	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253491509					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380208592	MGP_WTSI_10_43867339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44023529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1509	CpG island 1509	924 bp proximal
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
D10Mit38	DNA segment, Chr 10, Massachusetts Institute of Technology 38	1448 bp distal
Gm67081	predicted gene, 67081	525 bp upstream
Rr430916	regulatory region 430916	1310 bp proximal
Rr430917	regulatory region 430917	1429 bp proximal
Rr430918	regulatory region 430918	1512 bp proximal
Tssr97502	transcription start site region 97502	1254 bp downstream
Tssr97503	transcription start site region 97503	1283 bp downstream
Tssr97504	transcription start site region 97504	1314 bp downstream
Tssr97505	transcription start site region 97505	1408 bp downstream
Tssr97506	transcription start site region 97506	1429 bp downstream