rs253491862 SNP Detail

Summary

• ID
  rs253491862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55204643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCCATC CCAGGCTCTC
  CCTTCCCCCT TTCAACCCTG GCTATCTGCA TAGCTTCAGG CTGAGGGGAG CCTCCTACTC
  TCTCAGACCT GAAGTTCCAC AGTGCTGGCT CCCCAGAGAC AAAGTCATGA TGTCTAGGGA
  GGGCATCCAA TTTGCAGGTG CACGACTCAG TTTCCCTTTG ATAGTAAGAG AATTCTACGC
  Y
  CCCCTCCTCT CTCTCCTTAC TCTGTGCAGA TACTGTCTGT AGTCTCTGTT GCCCACATCT
  CTAGACAGGT GTCCTCCAAA GACCTTGCTA CCTTGGCTTA GGGACACATA TAGAGTGTCC
  ATTCTATTTT CCATGGTCCC TGAGATGCAG GCCATCATCC AATCTCTTTA AACCATGGAA
  GGGATTCACC CACTTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
ss391147585	MGP_WTSI_14_55586023	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	SPRET/EiJ
rs253491862					SNP	T	C	C	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391147585	MGP_WTSI_14_55586023	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55204643 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	1572 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	259 bp upstream
Rr407057	regulatory region 407057	within coordinates
Rr492378	regulatory region 492378	592 bp distal
Rr492379	regulatory region 492379	55 bp distal
Rr492380	regulatory region 492380	1049 bp proximal
Tssr4419	transcription start site region 4419	884 bp upstream
Tssr4420	transcription start site region 4420	771 bp upstream
Tssr4421	transcription start site region 4421	765 bp upstream
Tssr4422	transcription start site region 4422	713 bp upstream
Tssr4423	transcription start site region 4423	687 bp upstream
Tssr4424	transcription start site region 4424	649 bp upstream
Tssr4425	transcription start site region 4425	536 bp upstream
Tssr125718	transcription start site region 125718	1486 bp upstream
Tssr125719	transcription start site region 125719	1565 bp upstream
Tssr125720	transcription start site region 125720	1595 bp upstream
Tssr125721	transcription start site region 125721	1615 bp upstream
Tssr128732	transcription start site region 128732	1890 bp upstream
Tssr128733	transcription start site region 128733	1855 bp upstream
Tssr128734	transcription start site region 128734	1827 bp upstream
Tssr128735	transcription start site region 128735	1784 bp upstream
Tssr128736	transcription start site region 128736	1752 bp upstream
Tssr128737	transcription start site region 128737	1725 bp upstream
Tssr128738	transcription start site region 128738	1713 bp upstream
Tssr128739	transcription start site region 128739	1362 bp upstream
Tssr128740	transcription start site region 128740	1292 bp upstream
Tssr128741	transcription start site region 128741	1219 bp upstream
Tssr128742	transcription start site region 128742	601 bp upstream
Tssr128743	transcription start site region 128743	578 bp upstream
Tssr128744	transcription start site region 128744	249 bp upstream
Tssr128745	transcription start site region 128745	32 bp downstream
Tssr128746	transcription start site region 128746	766 bp downstream
Tssr128747	transcription start site region 128747	795 bp downstream
Tssr128748	transcription start site region 128748	814 bp downstream
Tssr128749	transcription start site region 128749	877 bp downstream
Tssr128750	transcription start site region 128750	896 bp downstream
Tssr128751	transcription start site region 128751	913 bp downstream
Tssr128752	transcription start site region 128752	966 bp downstream
Tssr128753	transcription start site region 128753	1155 bp downstream
Tssr128754	transcription start site region 128754	1234 bp downstream