rs253494475 SNP Detail

Summary

• ID
  rs253494475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44396682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGTGGGC TGATGGGTGA
  CTTTTCTTTA AGAGCAGGAT AACGTGATTC CAAGTAGGAA TTGTGTGCAA GCCTAGGACT
  TTGGTCTGGC GCTTAGCAAA TGGTTCACTG GGGAAATCGC ATCGAAAGAA GTGAGGAAGA
  CACTGGCTAC CGCCACTCAC AACTCGGTCT AACTTCACAT CTACCCCCAC TTCCAGGCAC
  Y
  AGCAAAGAGA AACCCCGGGA GACTGGGATA TGAGGGTGCG CCCAGGGCTC TGACCCGGGA
  AAACAATAGT GTATCCCTTC AGCCAGCATC CGGTTGCTGC TGCGTTCTTG ACAGCACACG
  CTGAGTTACA ACTGCACTCA CTCATTGGGC TCCGTCTGCC GGGGACCGCC TCTGCTGGGA
  GCCAGAGCCC AATCCTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552365	MGP_WTSI_19_44482733	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253494475					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552365	MGP_WTSI_19_44482733	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44396682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	592 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	414 bp distal
Gm59215	predicted gene, 59215	1094 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	534 bp upstream
Tssr5525	transcription start site region 5525	768 bp upstream
Tssr5526	transcription start site region 5526	735 bp upstream
Tssr5527	transcription start site region 5527	725 bp upstream
Tssr5528	transcription start site region 5528	695 bp upstream
Tssr5529	transcription start site region 5529	644 bp upstream
Tssr156612	transcription start site region 156612	1611 bp downstream
Tssr156613	transcription start site region 156613	1512 bp downstream
Tssr156614	transcription start site region 156614	205 bp downstream
Tssr159513	transcription start site region 159513	1661 bp upstream
Tssr159514	transcription start site region 159514	1613 bp upstream
Tssr159515	transcription start site region 159515	1591 bp upstream
Tssr159516	transcription start site region 159516	1475 bp upstream
Tssr159517	transcription start site region 159517	745 bp upstream
Tssr159518	transcription start site region 159518	674 bp upstream
Tssr159519	transcription start site region 159519	620 bp upstream
Tssr159520	transcription start site region 159520	575 bp upstream
Tssr159521	transcription start site region 159521	531 bp upstream
Tssr159522	transcription start site region 159522	421 bp upstream
Tssr159523	transcription start site region 159523	366 bp upstream
Tssr159524	transcription start site region 159524	342 bp upstream
Tssr159525	transcription start site region 159525	491 bp downstream
Tssr159526	transcription start site region 159526	521 bp downstream