rs253498647 SNP Detail

Summary

• ID
  rs253498647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCAAGG TTCTGCAAAT
  TTGCTGACAG AGGCCAAGAT CCTGACCTTT GTACTAAACA GGTACTGGTT GATTTTTTTT
  TTTTTTTAAT AATTCCTCCT CCCAGGGGAA GTTTCCTGGT GGAAGACAGG CTGGAAGTAA
  TGGTAAAGTG CAAACTGCAA TACTGTCTTG TTTTTTTTTT TTGCAGTGTA CTGCTGATAA
  R
  ATAAAGTCAA TCATTTCTCC ATGTATTTAT TTCTTGTGTT AGTTCAGCAT GGAATGTCAA
  GGCCAAATCA TTTCTCATTT GTTCCACTTG ATGTCAGATT TTTAAAAATC TACTTGTCAG
  GGCTGGAGAG ACGGCTCAGC AGATAAGAGA TCTGTCTGCT CTTCCAGAGG TCCTGAGTTC
  AATTTCCAGC AACCATATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350073084	MGP_WTSI_1_72329553	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253498647					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350073084	MGP_WTSI_1_72329553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1057 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	Intron
Rr412794	regulatory region 412794	within coordinates
Rr412795	regulatory region 412795	1270 bp proximal
Rr412796	regulatory region 412796	1401 bp proximal
Tmem169	transmembrane protein 169	1416 bp upstream
Tssr114	transcription start site region 114	1293 bp downstream
Tssr115	transcription start site region 115	1309 bp downstream
Tssr116	transcription start site region 116	1326 bp downstream
Tssr7298	transcription start site region 7298	1388 bp upstream
Tssr12164	transcription start site region 12164	1245 bp downstream
Tssr12165	transcription start site region 12165	1269 bp downstream