rs253499542 SNP Detail

Summary

• ID
  rs253499542
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72426051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGTTA AGAACACTTG
  CTGCACTTTA AGAAGACTTG AGTTCGGTTC CCAGCACCGA TGTCCGGTGG TTCACAACCA
  CCTTTAACTA TGCCTTCAGG GAATATCATG CTCTCTTCTG ATCTTCTTGG GTACCCCTCT
  TCCCCAAACA CACATGTGGT GCACACATAC ACACACATAC ATGTAAATAA AAATAAAATT
  W
  AAAATACTGT ATTTTGTATT CTTTACTAAT TTTTTTCTAA TTAATCTAAC TTAGTGACTT
  TCACTATATT CAAGTAGGCA ACTTCTACAT CACCTTTAAA CTGTTTGTAT AATATTGAGG
  AATGGATTGA AGTAAGATCT CATCTAGTCT CATCTAGCTA ATAAGGGTTG CATTTTAAGG
  AATTTTGAGA CTGAGATGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343234	CHEV_2_72433764	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253499542					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72426051 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	1962 bp proximal
Tssr18356	transcription start site region 18356	1838 bp upstream