rs253499774 SNP Detail

Summary

• ID
  rs253499774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTCAGCA TGCATGCTGG ATAAGACCTC
  TAGCTCTGAA CTACTCAATT ttttatatta agacagaatc ttactagatt gcccaaggca
  ggtcttgaat ttgggatctt ttggtcttag catcttaaaa tagccagggt ggcaggcctc
  Y
  gccatcaggc tagactCTAA CTCCTTCAAT CATTTCTTAA GAATCAGTGT CAAGGATCTG
  AGACTTAAAG ACACTGTCCC AAATTTCAAG GGACCTAAGA AGTAAGCAGG TTGAGAGGAA
  ATTCGGTCAT TATTTCGGAG GAGGTGAGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068347	CHEV_1_154653741	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253499774					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682362 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	912 bp proximal
Tssr9423	transcription start site region 9423	1161 bp upstream
Tssr9424	transcription start site region 9424	1208 bp upstream
Tssr9425	transcription start site region 9425	1216 bp upstream
Tssr9426	transcription start site region 9426	1266 bp upstream
Tssr9427	transcription start site region 9427	1294 bp upstream
Tssr9428	transcription start site region 9428	1307 bp upstream
Tssr9429	transcription start site region 9429	1337 bp upstream
Tssr14234	transcription start site region 14234	1699 bp downstream