rs253502034 SNP Detail

Summary

• ID
  rs253502034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127029874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC TTATAATAAA TAAATAAATA
  R
  ATAGATAGAT AGATAGATAG ATAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323529109	CHEV_10_126631061	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253502034					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127029874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	1126 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	1244 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr213521	regulatory region 213521	1874 bp distal
Rr224404	regulatory region 224404	326 bp proximal
Tssr96170	transcription start site region 96170	1235 bp upstream
Tssr99735	transcription start site region 99735	845 bp upstream
Tssr99736	transcription start site region 99736	1193 bp downstream
Tssr99737	transcription start site region 99737	1708 bp downstream