rs253503418 SNP Detail

Summary

• ID
  rs253503418
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190916925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCCATA GCTCATCAAG
  GGTTACACGT GCACAGACTG CGGCCCAGGA ATCGCACACC TGCCTGGCAG ACTTTGGCGG
  GCACATGTGG GGCAGGACGC TGAGGTGTAA AGACAGAGGC ACCTGCTAAC GCCCGCCTTT
  GAGAGGAAGG CGATCAGAAG GTCACAGGGA GGTAGTTTGG GGTGTGAAGC AGAACTGACC
  S
  GTGCCGCTGC CTCCATAGCA CCTACCACCC GGACTGTTAC GGTCCTGAGG AAAGGTCGCC
  GACGGTAGTA CAACCGTAAG CAACTGATGG CCCCAGAGAC AGACATTTCG GGCAAAATCA
  AGTTCTCTGC ACCCGGGTTC CTCAAGTCCA AGGCAGAGTC TCGCCCTTCA CAGGCCTCTG
  CCCTCCATCG AGGCCCCCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352827851	MGP_WTSI_1_193008607	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs253503418					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352827851	MGP_WTSI_1_193008607	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190916925 () rs orientation: forward

Symbol	Name	Function Class
Atf3	activating transcription factor 3	1395 bp upstream
Cpgi1219	CpG island 1219	within coordinates
Rr396712	regulatory region 396712	1187 bp downstream
Rr426067	regulatory region 426067	1399 bp distal
Rr426069	regulatory region 426069	898 bp distal
Rr426070	regulatory region 426070	103 bp proximal
Rr426071	regulatory region 426071	1900 bp proximal
Rr426072	regulatory region 426072	1954 bp proximal
Tssr10734	transcription start site region 10734	1223 bp downstream
Tssr10735	transcription start site region 10735	1132 bp downstream
Tssr10736	transcription start site region 10736	1018 bp downstream
Tssr10737	transcription start site region 10737	1151 bp upstream
Tssr10738	transcription start site region 10738	1960 bp upstream
Tssr15763	transcription start site region 15763	1468 bp upstream
Tssr15764	transcription start site region 15764	271 bp downstream
Tssr15765	transcription start site region 15765	1729 bp downstream