rs253503782 SNP Detail

Summary

• ID
  rs253503782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129229818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGC TGATGAAGGG CGGAAGTAAG
  R
  GTACCAACTC CGCAATCATG GCTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312048	CHEV_4_129013269	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs253503782					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129229818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	21 bp distal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	655 bp upstream
Rr367701	regulatory region 367701	358 bp downstream
Rr367702	regulatory region 367702	within coordinates
Rr600200	regulatory region 600200	683 bp distal
Rr600201	regulatory region 600201	3 bp distal
Rr600202	regulatory region 600202	716 bp proximal
Tssr39141	transcription start site region 39141	380 bp downstream
Tssr39142	transcription start site region 39142	38 bp downstream
Tssr39143	transcription start site region 39143	within coordinates
Tssr43492	transcription start site region 43492	761 bp upstream
Tssr43493	transcription start site region 43493	708 bp upstream
Tssr43494	transcription start site region 43494	648 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates